##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index13_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20349123	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.956669533129265	33.0	31.0	34.0	30.0	34.0
2	32.087464359029134	33.0	31.0	34.0	30.0	34.0
3	32.15867799314988	34.0	31.0	34.0	30.0	34.0
4	35.67752806840865	37.0	35.0	37.0	33.0	37.0
5	35.63835350545574	37.0	35.0	37.0	33.0	37.0
6	35.61421108909706	37.0	35.0	37.0	33.0	37.0
7	35.63232872492834	37.0	35.0	37.0	33.0	37.0
8	35.62054880694367	37.0	35.0	37.0	33.0	37.0
9	37.29199779273043	39.0	37.0	39.0	34.0	39.0
10-14	37.47192367946275	39.2	37.2	39.4	33.4	39.4
15-19	38.3958656203513	40.0	38.0	41.0	33.2	41.0
20-24	38.19897219157799	40.0	38.0	41.0	33.0	41.0
25-29	37.876261419226765	40.0	37.4	41.0	32.6	41.0
30-34	37.67334348512219	40.0	37.0	41.0	32.0	41.0
35-39	37.6574770716163	40.0	37.0	41.0	31.8	41.0
40-44	37.34001756242763	39.4	36.4	41.0	31.0	41.0
45-49	36.88284832717361	39.0	35.2	40.8	30.4	41.0
50-54	36.552044636026814	38.8	35.0	40.0	30.0	41.0
55-59	36.25572560547204	38.2	35.0	40.2	30.0	41.0
60-64	35.43980179391515	36.8	34.0	40.0	28.6	41.0
65-69	34.55466936830644	35.6	33.6	39.0	27.8	41.0
70-74	33.63301264629439	35.0	33.0	37.8	26.4	39.8
75-79	32.66443137623179	35.0	32.2	36.2	25.6	38.8
80-84	31.694040455699245	34.8	31.6	35.2	24.2	37.0
85-89	30.576651436034858	34.0	31.0	35.0	17.6	36.0
90	29.6225547410569	34.0	31.0	35.0	2.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	242.0
11	2424.0
12	7116.0
13	14208.0
14	22354.0
15	31302.0
16	38794.0
17	45466.0
18	52232.0
19	60451.0
20	69889.0
21	81845.0
22	95916.0
23	113165.0
24	134894.0
25	161128.0
26	194196.0
27	233553.0
28	283602.0
29	345546.0
30	423135.0
31	526094.0
32	664135.0
33	864082.0
34	1177754.0
35	1709972.0
36	2644036.0
37	3823074.0
38	4215454.0
39	2264410.0
40	48654.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	27.32297603194005	12.135564761193885	9.963259841714063	50.578199365152
2	22.227679676568343	19.03878927997168	35.535565239943175	23.1979658035168
3	25.918562730467563	21.19403137704554	22.492552938187853	30.39485295429904
4	27.917894546394926	27.934295774717132	18.91888078332581	25.22892889556213
5	29.330123705669614	30.17341546880849	21.11512584971505	19.381334975806848
6	24.107761969206777	32.899435166191495	21.51741148660706	21.47539137799466
7	21.330138873106414	18.756839163324823	37.453809229661026	22.45921273390774
8	21.4350003143003	21.990793335732732	29.063886905364843	27.51031944460213
9	21.65624062228559	20.907497856487318	31.317017637892764	26.119243883334324
10-14	24.563004486687365	26.23280889779403	24.623641454100213	24.580545161418392
15-19	24.962170589990176	25.08324632655038	25.050560851320743	24.904022232138708
20-24	24.721754482840623	25.342344794623596	25.398143898818255	24.53775682371753
25-29	24.58284236055531	25.386339928026086	25.322575553127496	24.708242158291107
30-34	24.613438353838827	25.321639092171978	25.27021493667263	24.794707617316565
35-39	24.587889575473937	25.472744227045325	25.2451836632752	24.69418253420554
40-44	24.57105027043267	25.303201309204397	25.39547834466757	24.73027007569536
45-49	24.511961535840733	25.361783123639004	25.323912959145524	24.80234238137474
50-54	24.531912389432065	25.464769006111627	25.349709308825556	24.653609295630748
55-59	24.5501679678655	25.378985500708218	25.308246101047505	24.76260043037877
60-64	24.468198301477184	25.41273428205921	25.404797764762215	24.714269651701393
65-69	24.48195091190292	25.53176812557118	25.40064331989718	24.585637642628722
70-74	24.53220192614963	25.482341151559158	25.289231213882434	24.696225708408782
75-79	24.553196549760024	25.413748507205234	25.374225683745287	24.65882925928945
80-84	24.46681444386531	25.539761392810266	25.383319284798617	24.610104878525803
85-89	24.58508914074999	25.527400738777768	25.283643508394732	24.603866612077514
90	24.310422346591885	25.6163759174054	25.485518107477095	24.587683628525618
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.90117539709205
2	45.425645480085144
3	56.31341568476661
4	53.14682344195706
5	48.71145868147646
6	45.583153347201446
7	43.789351607014154
8	48.94531975890243
9	47.77548450561992
10-14	49.143549648105754
15-19	49.86619282212889
20-24	49.25951130655815
25-29	49.29108451884642
30-34	49.408145971155385
35-39	49.28207210967948
40-44	49.30132034612803
45-49	49.314303917215476
50-54	49.18552168506282
55-59	49.31276839824427
60-64	49.18246795317857
65-69	49.067588554531646
70-74	49.22842763455841
75-79	49.21202580904948
80-84	49.07691932239111
85-89	49.1889557528275
90	48.89810597511751
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	58.0
1	32.0
2	4.5
3	4.5
4	7.5
5	10.5
6	13.5
7	17.0
8	29.5
9	48.5
10	57.0
11	80.0
12	142.5
13	230.5
14	359.0
15	603.5
16	1085.0
17	1872.5
18	3205.0
19	5756.0
20	7445.0
21	9950.5
22	16790.0
23	27323.5
24	41797.0
25	61110.0
26	85460.5
27	115999.0
28	149652.5
29	185088.5
30	204098.0
31	222051.5
32	260949.5
33	305100.5
34	353685.5
35	400627.5
36	447133.0
37	503362.5
38	553978.5
39	593671.5
40	614036.0
41	627391.0
42	653640.0
43	679301.5
44	695983.5
45	701720.0
46	703452.0
47	700260.5
48	697502.5
49	696113.0
50	694380.0
51	688822.5
52	682330.0
53	671773.0
54	665678.0
55	667033.5
56	658493.0
57	641605.5
58	620684.0
59	595133.5
60	579986.0
61	563494.5
62	531112.5
63	490543.0
64	440293.5
65	390307.5
66	341392.0
67	289431.5
68	239653.5
69	193872.5
70	170409.0
71	149871.5
72	112609.5
73	81916.0
74	55683.5
75	34500.5
76	20215.0
77	11054.5
78	5235.5
79	2204.0
80	1197.0
81	846.0
82	341.0
83	145.0
84	85.5
85	53.0
86	27.5
87	14.0
88	10.5
89	10.5
90	11.0
91	8.5
92	5.0
93	2.0
94	0.0
95	0.0
96	1.5
97	2.5
98	1.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.008973359687294633
3	0.045318906372525246
4	0.04512725192137273
5	0.044567031218003844
6	0.008462281150887927
7	0.015071902607301553
8	0.011499267069150842
9	0.008260798266342977
10-14	0.010463350189588022
15-19	0.009134545994930592
20-24	0.012579411898979627
25-29	0.005326028055361403
30-34	0.011129717973595226
35-39	0.006865160724616978
40-44	0.00195684108843413
45-49	6.01500123617121E-4
50-54	0.0010221570728134082
55-59	0.0017189930003371644
60-64	7.223898543440914E-4
65-69	0.00730056032390192
70-74	0.0029996378713716557
75-79	0.0043264763793506
80-84	0.0018752650912769067
85-89	0.001327821351318187
90	0.012831019793826004
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.0349123E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.916662276773955
#Duplication Level	Relative count
1	100.0
2	30.83198237519225
3	15.825955023485887
4	9.837053664214158
5	6.690360394064098
6	4.970486760610218
7	3.692272519433013
8	3.0375774202934696
9	2.473292596749387
10++	30.480733258511037
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4278800	2.5818596	5.081304	1
CCTGG	4265725	2.5653374	5.963449	1
GAAGA	4265625	2.5239496	5.018563	2
AAGAA	4344905	2.5075462	5.005446	2
CTTCT	4410820	2.5066547	5.4067893	1
CTGGA	4040530	2.4062111	8.741509	1
TCCAG	3976945	2.33277	5.5191374	2
CTCCT	3991360	2.2983243	7.294476	1
CTGGG	3691340	2.2537656	8.279651	1
CAGGA	3714115	2.2192676	5.5989985	1
CTTCA	3843855	2.191801	5.7369723	1
CTCCA	3731950	2.1561809	7.9316325	1
CCCAG	3618875	2.1508553	7.057385	1
CAGAA	3542570	2.064636	5.018888	1
CTCTG	3421345	2.0001395	6.079226	1
CTGGC	3138025	1.8871574	5.3894296	1
TGGAA	3126505	1.8437337	5.286864	2
CTGAA	3134520	1.8206946	5.26665	1
CTCAG	2940720	1.724948	6.237446	1
CTGGT	2784670	1.6527616	5.0266485	1
CTTGG	2744995	1.6292136	5.3309693	1
>>END_MODULE
